Pathway Computation in Models Derived from Bio-Science Text Sources

Troels Andreasen, Henrik Bulskov Styltsvig, Per Anker Jensen, Jørgen Fischer Nilsson

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

Abstract

This paper outlines a system, OntoScape, serving to accomplish complex inference tasks on knowledge bases and bio-models derived from life-science text corpora. The system applies so-called natural logic, a form of logic which is readable for humans. This logic affords ontological representations of complex terms appearing in the text sources. Along with logical propositions, the system applies a semantic graph representation facilitating calculation of bio-pathways. More generally, the system affords means of query answering appealing to general and domain specific inference rules.
Original languageEnglish
Title of host publicationFoundations of Intelligent Systems : 23rd International Symposium, ISMIS 2017, Warsaw, Poland, June 26-29, 2017, Proceedings
EditorsMarzena Kryszkiewicz, Annalisa Appice, Dominik Ślęzak, Henryk Rybinski, Andrzej Skowron, Zbigniew W. Raś
Place of PublicationCham
PublisherSpringer
Publication date2017
Pages424-434
ISBN (Print)978-3-319-60437-4
ISBN (Electronic)978-3-319-60438-1
DOIs
Publication statusPublished - 2017
Event23rd International Symposium on Methodologies for Intelligent Systems: 23rd International Symposium - Warsaw University of Technology, Warsawa, Poland
Duration: 26 Jun 201729 Jun 2017
Conference number: 23
http://ismis2017.ii.pw.edu.pl/

Conference

Conference23rd International Symposium on Methodologies for Intelligent Systems
Number23
LocationWarsaw University of Technology
CountryPoland
CityWarsawa
Period26/06/201729/06/2017
Internet address
SeriesLecture Notes in Computer Science
Number10352
ISSN0302-9743
SeriesLecture notes in artificial intelligence
Number10352
ISSN0302-9743

Keywords

  • Semantic text processing in bio-informatics
  • Bio-models using natural logic and semantic graphs
  • Querying and pathway computation

Cite this

Andreasen, T., Styltsvig, H. B., Jensen, P. A., & Nilsson, J. F. (2017). Pathway Computation in Models Derived from Bio-Science Text Sources. In M. Kryszkiewicz, A. Appice, D. Ślęzak, H. Rybinski, A. Skowron, & Z. W. Raś (Eds.), Foundations of Intelligent Systems : 23rd International Symposium, ISMIS 2017, Warsaw, Poland, June 26-29, 2017, Proceedings (pp. 424-434). Springer. Lecture Notes in Computer Science, No. 10352, Lecture notes in artificial intelligence, No. 10352 https://doi.org/10.1007/978-3-319-60438-1_42