SIABO

Semantic Information Access through Biomedical Ontologies

Troels Andreasen, Sine Zambach, Tine Lassen, Jørgen Fischer Nilsson, Bodil Nistrup Madsen, Per Anker Jensen, Hanne Erdman Thomsen, Bartlomiej Antoni Szymczak

Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningpeer review

Resumé

The scientific aim of the project presented in this paper is to provide an approach to representing, organizing, and accessing conceptual content of biomedical texts using a formal ontology. The ontology is based on UMLS resources supplemented with domain ontologies developed in the project. The approach introduces the notion of ‘generative ontologies', i.e., ontologies providing increasingly specialized concepts reflecting the phrase structure of natural language. Furthermore, we propose a novel so-called ‘ontological semantics' which maps noun phrases from texts and queries into nodes in the generative ontology. This enables an advanced form of data mining of texts identifying paraphrases and concept relations and measuring distances between key concepts in texts. Thus, the project is unique in its attempt to provide a formal underpinning of conceptual similarity or relatedness of meaning.
OriginalsprogEngelsk
TitelKEOD 2009 : 1st International Conference on Knowledge Engeneering and Ontology Development
RedaktørerJan L. G. Dietz
Antal sider6
ForlagInstitute for Systems and Technologies of Information, Control and Communication
Publikationsdato2009
Sider171-176
ISBN (Trykt)978-989-674-012-2
StatusUdgivet - 2009
BegivenhedInternational Conference on Knowledge Engeneering and Ontology Development (KEOD) - Funchal, Portugal
Varighed: 6 okt. 20098 okt. 2009

Konference

KonferenceInternational Conference on Knowledge Engeneering and Ontology Development (KEOD)
LandPortugal
ByFunchal
Periode06/10/200908/10/2009

Emneord

  • Domæne modellering
  • Ontologi-konstruktion
  • Natursprogsanalyse
  • Ontologisk, indholdsbaseret søgning

Citer dette

Andreasen, T., Zambach, S., Lassen, T., Nilsson, J. F., Madsen, B. N., Jensen, P. A., ... Szymczak, B. A. (2009). SIABO: Semantic Information Access through Biomedical Ontologies. I J. L. G. Dietz (red.), KEOD 2009: 1st International Conference on Knowledge Engeneering and Ontology Development (s. 171-176). Institute for Systems and Technologies of Information, Control and Communication.
Andreasen, Troels ; Zambach, Sine ; Lassen, Tine ; Nilsson, Jørgen Fischer ; Madsen, Bodil Nistrup ; Jensen, Per Anker ; Thomsen, Hanne Erdman ; Szymczak, Bartlomiej Antoni. / SIABO : Semantic Information Access through Biomedical Ontologies. KEOD 2009: 1st International Conference on Knowledge Engeneering and Ontology Development. red. / Jan L. G. Dietz. Institute for Systems and Technologies of Information, Control and Communication, 2009. s. 171-176
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title = "SIABO: Semantic Information Access through Biomedical Ontologies",
abstract = "The scientific aim of the project presented in this paper is to provide an approach to representing, organizing, and accessing conceptual content of biomedical texts using a formal ontology. The ontology is based on UMLS resources supplemented with domain ontologies developed in the project. The approach introduces the notion of ‘generative ontologies', i.e., ontologies providing increasingly specialized concepts reflecting the phrase structure of natural language. Furthermore, we propose a novel so-called ‘ontological semantics' which maps noun phrases from texts and queries into nodes in the generative ontology. This enables an advanced form of data mining of texts identifying paraphrases and concept relations and measuring distances between key concepts in texts. Thus, the project is unique in its attempt to provide a formal underpinning of conceptual similarity or relatedness of meaning.",
keywords = "Dom{\ae}ne modellering, Ontologi-konstruktion, Natursprogsanalyse, Ontologisk, indholdsbaseret s{\o}gning, Domain modelling, Ontology engeneering, NLP, Ontological, Content-oriented text search",
author = "Troels Andreasen and Sine Zambach and Tine Lassen and Nilsson, {J{\o}rgen Fischer} and Madsen, {Bodil Nistrup} and Jensen, {Per Anker} and Thomsen, {Hanne Erdman} and Szymczak, {Bartlomiej Antoni}",
year = "2009",
language = "English",
isbn = "978-989-674-012-2",
pages = "171--176",
editor = "Dietz, {Jan L. G.}",
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Andreasen, T, Zambach, S, Lassen, T, Nilsson, JF, Madsen, BN, Jensen, PA, Thomsen, HE & Szymczak, BA 2009, SIABO: Semantic Information Access through Biomedical Ontologies. i JLG Dietz (red.), KEOD 2009: 1st International Conference on Knowledge Engeneering and Ontology Development. Institute for Systems and Technologies of Information, Control and Communication, s. 171-176, International Conference on Knowledge Engeneering and Ontology Development (KEOD), Funchal, Portugal, 06/10/2009.

SIABO : Semantic Information Access through Biomedical Ontologies. / Andreasen, Troels; Zambach, Sine; Lassen, Tine; Nilsson, Jørgen Fischer; Madsen, Bodil Nistrup; Jensen, Per Anker; Thomsen, Hanne Erdman; Szymczak, Bartlomiej Antoni.

KEOD 2009: 1st International Conference on Knowledge Engeneering and Ontology Development. red. / Jan L. G. Dietz. Institute for Systems and Technologies of Information, Control and Communication, 2009. s. 171-176.

Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningpeer review

TY - GEN

T1 - SIABO

T2 - Semantic Information Access through Biomedical Ontologies

AU - Andreasen, Troels

AU - Zambach, Sine

AU - Lassen, Tine

AU - Nilsson, Jørgen Fischer

AU - Madsen, Bodil Nistrup

AU - Jensen, Per Anker

AU - Thomsen, Hanne Erdman

AU - Szymczak, Bartlomiej Antoni

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N2 - The scientific aim of the project presented in this paper is to provide an approach to representing, organizing, and accessing conceptual content of biomedical texts using a formal ontology. The ontology is based on UMLS resources supplemented with domain ontologies developed in the project. The approach introduces the notion of ‘generative ontologies', i.e., ontologies providing increasingly specialized concepts reflecting the phrase structure of natural language. Furthermore, we propose a novel so-called ‘ontological semantics' which maps noun phrases from texts and queries into nodes in the generative ontology. This enables an advanced form of data mining of texts identifying paraphrases and concept relations and measuring distances between key concepts in texts. Thus, the project is unique in its attempt to provide a formal underpinning of conceptual similarity or relatedness of meaning.

AB - The scientific aim of the project presented in this paper is to provide an approach to representing, organizing, and accessing conceptual content of biomedical texts using a formal ontology. The ontology is based on UMLS resources supplemented with domain ontologies developed in the project. The approach introduces the notion of ‘generative ontologies', i.e., ontologies providing increasingly specialized concepts reflecting the phrase structure of natural language. Furthermore, we propose a novel so-called ‘ontological semantics' which maps noun phrases from texts and queries into nodes in the generative ontology. This enables an advanced form of data mining of texts identifying paraphrases and concept relations and measuring distances between key concepts in texts. Thus, the project is unique in its attempt to provide a formal underpinning of conceptual similarity or relatedness of meaning.

KW - Domæne modellering

KW - Ontologi-konstruktion

KW - Natursprogsanalyse

KW - Ontologisk, indholdsbaseret søgning

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KW - Ontology engeneering

KW - NLP

KW - Ontological, Content-oriented text search

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Andreasen T, Zambach S, Lassen T, Nilsson JF, Madsen BN, Jensen PA et al. SIABO: Semantic Information Access through Biomedical Ontologies. I Dietz JLG, red., KEOD 2009: 1st International Conference on Knowledge Engeneering and Ontology Development. Institute for Systems and Technologies of Information, Control and Communication. 2009. s. 171-176