Pathway Computation in Models Derived from Bio-Science Text Sources

Troels Andreasen; Henrik Bulskov Styltsvig; Per Anker Jensen; Jørgen Fischer Nilsson

doi:10.1007/978-3-319-60438-1_42

Pathway Computation in Models Derived from Bio-Science Text Sources

Troels Andreasen, Henrik Bulskov Styltsvig, Per Anker Jensen, Jørgen Fischer Nilsson

Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › peer review

4 Citationer (Scopus)

Abstract

This paper outlines a system, OntoScape, serving to accomplish complex inference tasks on knowledge bases and bio-models derived from life-science text corpora. The system applies so-called natural logic, a form of logic which is readable for humans. This logic affords ontological representations of complex terms appearing in the text sources. Along with logical propositions, the system applies a semantic graph representation facilitating calculation of bio-pathways. More generally, the system affords means of query answering appealing to general and domain specific inference rules.

Originalsprog	Engelsk
Titel	Foundations of Intelligent Systems : 23rd International Symposium, ISMIS 2017, Warsaw, Poland, June 26-29, 2017, Proceedings
Redaktører	Marzena Kryszkiewicz, Annalisa Appice, Dominik Ślęzak, Henryk Rybinski, Andrzej Skowron, Zbigniew W. Raś
Antal sider	11
Udgivelsessted	Cham
Forlag	Springer
Publikationsdato	2017
Sider	424-434
ISBN (Trykt)	978-3-319-60437-4
ISBN (Elektronisk)	978-3-319-60438-1
DOI	https://doi.org/10.1007/978-3-319-60438-1_42
Status	Udgivet - 2017
Begivenhed	23rd International Symposium on Methodologies for Intelligent Systems: 23rd International Symposium - Warsaw University of Technology, Warsawa, Polen Varighed: 26 jun. 2017 → 29 jun. 2017 Konferencens nummer: 23 http://ismis2017.ii.pw.edu.pl/

Konference

Konference	23rd International Symposium on Methodologies for Intelligent Systems
Nummer	23
Lokation	Warsaw University of Technology
Land/Område	Polen
By	Warsawa
Periode	26/06/2017 → 29/06/2017
Internetadresse	http://ismis2017.ii.pw.edu.pl/

Navn	Lecture Notes in Computer Science
Nummer	10352
ISSN	0302-9743

Navn	Lecture notes in artificial intelligence
Nummer	10352
ISSN	0302-9743

Link til dokument

10.1007/978-3-319-60438-1_42

Citer dette

Andreasen, T., Styltsvig, H. B., Jensen, P. A., & Nilsson, J. F. (2017). Pathway Computation in Models Derived from Bio-Science Text Sources. I M. Kryszkiewicz, A. Appice, D. Ślęzak, H. Rybinski, A. Skowron, & Z. W. Raś (red.), Foundations of Intelligent Systems : 23rd International Symposium, ISMIS 2017, Warsaw, Poland, June 26-29, 2017, Proceedings (s. 424-434). Springer. https://doi.org/10.1007/978-3-319-60438-1_42

Andreasen, Troels ; Styltsvig, Henrik Bulskov ; Jensen, Per Anker et al. / Pathway Computation in Models Derived from Bio-Science Text Sources. Foundations of Intelligent Systems : 23rd International Symposium, ISMIS 2017, Warsaw, Poland, June 26-29, 2017, Proceedings . red. / Marzena Kryszkiewicz ; Annalisa Appice ; Dominik Ślęzak ; Henryk Rybinski ; Andrzej Skowron ; Zbigniew W. Raś. Cham : Springer, 2017. s. 424-434 (Lecture Notes in Computer Science; Nr. 10352). (Lecture notes in artificial intelligence; Nr. 10352).

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title = "Pathway Computation in Models Derived from Bio-Science Text Sources",

abstract = "This paper outlines a system, OntoScape, serving to accomplish complex inference tasks on knowledge bases and bio-models derived from life-science text corpora. The system applies so-called natural logic, a form of logic which is readable for humans. This logic affords ontological representations of complex terms appearing in the text sources. Along with logical propositions, the system applies a semantic graph representation facilitating calculation of bio-pathways. More generally, the system affords means of query answering appealing to general and domain specific inference rules.",

keywords = "Bio-models using natural logic and semantic graphs, Querying and pathway computation, Semantic text processing in bio-informatics",

author = "Troels Andreasen and Styltsvig, {Henrik Bulskov} and Jensen, {Per Anker} and Nilsson, {J{\o}rgen Fischer}",

year = "2017",

doi = "10.1007/978-3-319-60438-1_42",

language = "English",

isbn = "978-3-319-60437-4",

series = "Lecture Notes in Computer Science",

publisher = "Springer",

number = "10352",

pages = "424--434",

editor = "Kryszkiewicz, {Marzena } and Annalisa Appice and Dominik {\'S}l{\c e}zak and Henryk Rybinski and Andrzej Skowron and Ra{\'s}, {Zbigniew W.}",

booktitle = "Foundations of Intelligent Systems",

note = "23rd International Symposium on Methodologies for Intelligent Systems ; Conference date: 26-06-2017 Through 29-06-2017",

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Andreasen, T , Styltsvig, HB, Jensen, PA & Nilsson, JF 2017, Pathway Computation in Models Derived from Bio-Science Text Sources. i M Kryszkiewicz, A Appice, D Ślęzak, H Rybinski, A Skowron & ZW Raś (red), Foundations of Intelligent Systems : 23rd International Symposium, ISMIS 2017, Warsaw, Poland, June 26-29, 2017, Proceedings . Springer, Cham, Lecture Notes in Computer Science, nr. 10352, Lecture notes in artificial intelligence, nr. 10352, s. 424-434, 23rd International Symposium on Methodologies for Intelligent Systems, Warsawa, Polen, 26/06/2017. https://doi.org/10.1007/978-3-319-60438-1_42

Pathway Computation in Models Derived from Bio-Science Text Sources. / Andreasen, Troels ; Styltsvig, Henrik Bulskov; Jensen, Per Anker et al.
Foundations of Intelligent Systems : 23rd International Symposium, ISMIS 2017, Warsaw, Poland, June 26-29, 2017, Proceedings . red. / Marzena Kryszkiewicz; Annalisa Appice; Dominik Ślęzak; Henryk Rybinski; Andrzej Skowron; Zbigniew W. Raś. Cham: Springer, 2017. s. 424-434 (Lecture Notes in Computer Science; Nr. 10352). (Lecture notes in artificial intelligence; Nr. 10352).

Publikation: Bidrag til bog/antologi/rapport › Konferencebidrag i proceedings › Forskning › peer review

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AB - This paper outlines a system, OntoScape, serving to accomplish complex inference tasks on knowledge bases and bio-models derived from life-science text corpora. The system applies so-called natural logic, a form of logic which is readable for humans. This logic affords ontological representations of complex terms appearing in the text sources. Along with logical propositions, the system applies a semantic graph representation facilitating calculation of bio-pathways. More generally, the system affords means of query answering appealing to general and domain specific inference rules.

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KW - Querying and pathway computation

KW - Semantic text processing in bio-informatics

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Andreasen T , Styltsvig HB, Jensen PA, Nilsson JF. Pathway Computation in Models Derived from Bio-Science Text Sources. I Kryszkiewicz M, Appice A, Ślęzak D, Rybinski H, Skowron A, Raś ZW, red., Foundations of Intelligent Systems : 23rd International Symposium, ISMIS 2017, Warsaw, Poland, June 26-29, 2017, Proceedings . Cham: Springer. 2017. s. 424-434. (Lecture Notes in Computer Science; Nr. 10352). (Lecture notes in artificial intelligence; Nr. 10352). doi: 10.1007/978-3-319-60438-1_42